John Shadid,
Scott Hutchinson, Gary Hennigan, Harry Moffat, Karen
Devine, A. G. Salinger, Efficient Parallel Computation of Unstructured
Finite Element Reacting Flow Solutions”, Parallel Computing 23,
13071325, 1997
John N.
Shadid, Raymond S. Tuminaro, Homer F. Walker, “An inexact Newton
method for fullycoupled solution of the NavierStokes equations with
heat and mass transport”, J. Comp. Phys. 137, 155185 (1997)
Andrew
G. Salinger, John N. Shadid, Harry K. Moffat, Scott A.
Hutchinson, Gary L. Hennigan, Karen D. Devine, “Parallel Reacting
Flow
Calculations for Chemical Vapor Deposition Reactor Design”, Proceedings
of the International Conference on Computational Engineering Science

San Jose, Costa Rica, May 4  9, 1997
M. J.
Martinez, P.L. Hopkins, J. N. Shadid, “LDRD final report: Physical
simulation of non isothermal multiphase multicomponent flow in porous
media”, Technical report Sandia National Laboratories, SAND971766
(July
1997)
M. J.
Martinez, P.L. Hopkins, J. N. Shadid, “Nonisothermal multiphase
subsurface transport on parallel computers”, Proc. of 1997 ASME
Int.
Mech. Eng. Congress and Expo., Dallas TX, Nov. 1621, 1997, Fluids Eng.
Div., FEDVol 224, 413422
K.D. Devine,
G.L. Hennigan, S.A. Hutchinson, A.G. Salinger, J.N. Shadid,
R.S.Tuminaro, “High performance MP unstructured finite element
simulation of chemically reacting flows”, Proceedings of SC’97,
San
Jose, December, 1997.
Salinger,
A., Shadid, J., Hutchinson, S., Hennigan, G., Devine, K.,
Moffat, H., “Massively Parallel Computations of 3D Flow and Reactions
in
Chemical Vapor Deposition Reactors”, Technical report Sandia National
Laboratories, SAND973092, Dec. 1997
R. S.
Tuminaro, J. N. Shadid, and S. A. Hutchinson, “Parallel Sparse
MatrixVector Multiply Software for Matrices with Data Locality”,
Concurrency: Practice and Experience, Vol 10(3), 229247, March 1998
J.N. Shadid,
R. S. Tuminaro, C. H. Tong, K.D. Devine, A.G. Salinger,
S.A. Hutchinson, G.L. Hennigan, “PERFORMANCE OF PARALLEL NEWTONKRYLOV
METHODS FOR UNSTRUCTURED FINITE ELMENT REACTING FLOW SOLUTIONS”,
Tenth
International Conference on Finite Elements in Fluids, Tuscon, AZ.
January, 1998
Devine,
K., Shadid, J., Salinger, A., Hutchinson, S., Hennigan, G.,
“Toward parallel, adaptive mesh refinement for Chemically Reacting
Flow
Simulations”, Proceedings of Tenth International Conference on
Finite
Elements in Fluids, Tuscon, AZ. January, 1998
C. Theodoropoulos,
H.K. Moffat and T.J. Mountaziaris, “Robust
ReactionTransport Models of MOVPE Reactors”, Mat. Res. Soc. Symp.
Proc., V.490, pp155160, 1998
S.Y. Shvartsman,
R. RicoMartinez, E.S. Titi, C. Theodoropoulos, T.J.
Mountaziaris and I.G. Keverkidis”, Order Reduction of Nonlinear
Dynamic
Models for Distributed Reacting systems”, Proceedings of the 5th
Int.
Federation for Automatic Control (IFAC) Symposium om Dynamics and
Control of Process Systems (DYCOPS5), Elshiver Science Ltd, Oxford,
UK,
1998
J. N.
Shadid, “A Comparison of Parallel Preconditioners for Solution
of
Unstructured Finite Element Fluid Flow, Heat and Mass Transfer
Simulations”, Proceedings of the Fourth japanUS Symposium on Finite
Element Methods in LargeScale Computational Fluid Dynamics, Nihon
University, Tokyo Japan, April 24, 1998
S. Hutchinson,
J. Castro, J. Shadid, R. Campbell. “Corona  A fully
implicit, fullycoupled continuum plasma modeling code”, in Advanced
Computational Methods in Engineering  ACOMEN’98, Ghent, Belgium,
September 1998.
Shadid,
J., Salinger, A., Schmidt, R., Smith, T., Hutchinson, S.,
Hennigan, G., Devine, K., Moffat, H., “MPSalsa Version 1.5: A “MPSalsa:
A Finite Element Computer Program for Reacting Flow Problems; Part 1

Theoretical Development”, Sandia National Laboratories Technical
Report,
SAND982864, 1998
Salinger,
A., Shadid, J, Hutchinson, S., Hennigan, G., Devine, K., and
Moffat, H. “Analysis of gallium arsenide deposition in a horizontal
Chemical vapor deposition reactor using massively parallel
computations”, Sandia National Laboratories Tech Report, SAND980242,
Albuquerque, NM, 1998
A. G.
Salinger, and R. B. Lehoucq, “Linear Stability Analysis on
Massively Parallel Computers”, Proceedings of the AIChE Annual
Meeting,
1998
A. G.
Salinger and L.A. Romero, “CVD Reactor Design using Linear and
Nonlinear Stability Analysis”, Proceedings of the AIChE Annual
Meeting,
1998
R.B. Lehoucq,
and A.G. Salinger, “Massively Parallel linear Stability
Analysis with P_ARPACK for 3D fluid Flow with MPSALSA”, Applied
Parallel
Computing, PARA’98, Eds, B. Agstrom, J. Dongarra, E. Elmroth, and
J.
Wasniewski, In Lecture Notes in Computer Science, No. 1541, 286295,
Springer Verlag, 1998
Erickson,
K. L., P. L. Hopkins, and P. T. Vianco, "Modeling the
SolidState Reaction Between SnPb Solder and a Porous Substrate
Coating," Journal of Electronic Materials, Vol. 27, No. 11, 11771192,
1998.
J. N.
Shadid, “A Fullycoupled NewtonKrylov Solution Method for
Parallel Unstructured Finite Element Fluid Flow, Heat and Mass Transfer
Simulations”, Int. J. CFD, Vol 12, pp. 199211, 1999
Salinger,
A., Shadid, J, Hutchinson, S., Hennigan, G., Devine, K., and
Moffat, H. “Analysis of gallium arsenide deposition in a horizontal
Chemical vapor deposition reactor using massively parallel
computations”, J. of Crystal Growth, 203, 516533, 1999
Wong,
C., Adkins, D., FryeMason, G., Hudson, M., Kottenstette, R.,
Matzzke, C. Shadid, J., Salinger, A., “Modeling transport in gas
chromatography columns for the MicroChemlab”, Proceedings of SPIE
Conf.
on Microfluidic Devices and Systems II, Santa Clara CA, Sept. 1999
S. A.
Hutchinson, L., Prevost, J. N. Shadid, C. Tong, and R. S.
Tuminaro, “Aztec User’s Guide Version 2.0", Sandia National
Laboratories
Technical Report, Sand998801J 1999
Tuminaro,
R.S., Heroux, M.A., Hutchinson, S.A., Shadid, J.N., “Aztec
user’s guide: version 2.1”, Sandia National Laboratories Technical
Report, SAND998801J, Nov, 1999
Martinez,
M.J. and Hopkins, P.I., “Modeling subsurface multiphase
transport of JP8 during a fuel spill fire”, Sandia National Laboratories
Technical Report, SAND20002464, October, 2000
Tong,
C.H., Tuminaro, R.S., Devine, K.D. and Shadid, J.N., “Design of
a
multilevel preconditioning module for unstructured calculations:
Twolevel Schwarz”, Tech Report in preparation
A. G.
Salinger, R. B. Lehoucq, and L. A. Romero, “Stability Analysis
of
LargeScale Incompressible Flow Calculations on Massively Parallel
Computers”, submitted to special issue of japan J. CFD, for plenary
papers of ISCFD’99
Shadid.,
J.N.,Tuminaro, R.S., Tong, C.H., and Devine, K.D., “Parallel
preconditioned Krylov solvers for unstructured finite element reacting
flow solutions”, To be submitted to J. Comp. Physics
S.Y. Shvartsman,
C. Theodoropoulos, R. RicoMartinez, E.S. Titi, T.J.
Mountaziaris and I.G. Keverkidis, (invited paper), “Order Reduction
of
Nonlinear Dynamic Models for Distributed Reacting systems”, Journal
of
Process Control (in press)
C. Theodoropoulos, T.J. Mountaziaris, H.K. Moffat, and J. Han, “Design
of gas Inlets for the Growth of Gallium Nitride by metalorganic Vapor
Epitaxy”, Journal of Crystal Growth 217 (2000) 6581
R. P.
Pawlowski, C. Theodoropoulos, T.J. Mountziaris, H.K. Moffat, J.
Han, and E. J. Thrush, “OPTIMAL DESIGN OF REACTORS FOR METALORGANIC
VAPOR PHASE EPITAXY OF GROUP III NITRIDES”, Proc. Mat. Res. Soc.,
v.616,
2000
R.P. Pawlowski,
C. Theodoropoulos, A.G. Salinger, H.K. Moffat, T.J.
Mountziaris, J.N. Shadid, and E.J. Thrush, “REACTIONTRANSPORT
MODELS OF
THE METALORGANIC VAPOR PHASE EPITAXY OF GALLIUM NITRIDE”, ECS
Proceedings volume: Chemical Vapor Deposition: CVD XV (15th) , M.D.
Allendorf, T.M. Besmann. PV 200013, Toronto, Canada, Spring 2000
K. Devine,
B. Hendrickson, E. Boman, M. St.John, and C. Vaughan. "Design
of Dynamic LoadBalancing Tools for Parallel Applications." Proceedings
of the International Conference on Supercomputing, Santa Fe, May, 2000.
R.P. Pawlowski,
C. Theodoropoulos, A.G. Salinger, T.J. Mountziaris, H.K.
Moffat, J.N. Shadid, and E.J. Thrush, “Fundamental Models of the
Metalorganic Vapor Phase Epitaxy of Gallium Nitride and their use in
Reactor Design”, Journal of Crystal Growth, 221, 622628, 2000
R.P. Pawlowski,
C. Theodoropoulos, T.J. Mountaziaris, A.G. Salinger, and
J.N. Shadid,, “Performance Diagrams of Stagnation Flow and rotatingDisk
Reactors used for Metalorganic vapor Phase Epitaxy of GaN,”, to
be
submitted to J. Crystal Growth
C. Theodoropoulos,
I.G. Keverkidis, and T.J. Mountaziaris, “Reduced
Order Models of the Metalorganic Vapor Phase Epitaxy of Compound
Semiconductors”, in preperation
R.P. Pawlowski,
A. Salinger, and J. Mountaziaris, “On the Physics of
Isothermal Impinging Jets: A Bifurcation and Stability Analysis”,
to be
submitted to J. Fluid Mech.
R. S.
Tuminaro, C. H. Tong, J.N. Shadid, K.D. Devine, D.M. Day, “On a
Multilevel Preconditioning Module for Unstructured Mesh Krylov Solvers:
Two level Schwarz”, to appear in Comm. Numer. Meth. Eng, 2002
Tuminaro,
R.S., Walker, H.F., and Shadid, J.N., “Comments on
backtracking failure in NewtonGMRES methods with a demonstration for
the NavierStokes Equations”, in preperation, submitted to J. Comp.
Physics, Jan 2001
A.G. Salinger,
R.P. Pawlowski, and L.A. Romero, “Scalable Bifurcation
Analysis Algorithms for Large Parallel Applications,” accepted
for
publication in Proceedings of the First MIT Conference in Computational
Fluid and Structural Mechanics, Elsevier, 2001
A.G. Salinger,
R.B. Lehoucq, R.P. Pawlowski, and J.N. Shadid,
“Understanding the 8:1 Cavity Problem via Scalable Stability Analysis
Algorithms,” accepted for publication in Proceedings of the First
MIT
Conference in Computational Fluid and Structural Mechanics, Elsevier,
2001.
E.A. Burroughs,
L.A. Romero, and A.G. Salinger, “LargeScale Eigenvalue
Calculations for Computing the Scalability of Buoyancy Driven Flows,”
Sandia Tech Report, SAND20010113, 2001; Journal articale in
preparation.
R.B. Lehoucq
and A.G. Salinger, “LargeScale Eigenvalue Calculations for
Stability Analysis of Steady Flows on Massively Parallel Computers,”
in
press Int. J Numer Meth Fluids, 2000.
S.A. Means.
“Impact of Sodium on Intracellular Calcium and its
Implications in Neurotransmitter Release”, Masters Thesis in Applied
Mathermatics, Univ. New Mexico, 2001.
R.P. Pawlowski
and A.G. Salinger, “Numerical Simulation of the Partial
Catalytic Oxidation of Ethane to Ethylene in Short Contact Time
Reactors,” Sandia Tech Report, SAND20011338, 2001.
A.G. Salinger,
R.P. Pawlowski, and L.A. Romero, “Scalable Bifurcation
Analysis Algorithms for Large Parallel Applications,” Computational
Fluid and Solid Mechanics, Ed. K.J. Bathe, Proceedings of the First
MIT
Conference on Computational Fluid and Solid Mechanics, Elsevier,
16471650, 2001.
A.G. Salinger,
R.P. Pawlowski, J.N. Shadid, B. van Bloemen Waanders, R.
Bartlett, G.C. Itle and L. Biegler, “Reacting Flows Optimization
with
rSQP and MPSalsa,” Proceedings of the First Sandia Workshop on
LargeScale PDE Constrained Optimization, Eds. Ghattas, van Bloemen
Waanders, Biegler, Heinkenschloss, in Lecture Notes in Computer
Science, Springer 2001.
R. Pawlowski,
A. Salinger, S. D. Habermehl, P. Ho, “Modeling of a Silane
LPCVD Process Used for Microelectronics and MEMS Fabrication”,
in ECS
Proceedings volume: Fundamental GasPhase and Surface Chemistry of Vapor
Deposition II and Process Control, Diagnostics, and Modeling
inSemiconductor Manufacturing IV, Spring 2001.
Roger
P. Pawlowski, Andrew G. Salinger, Louis A. Romero, and John N.
Shadid, "Computational Design and Analysis of MOVPE Reactors",
J. Phys.
IV France 11 (2001)
Tuminaro,
R.S., Walker, H, and Shadid, J.N., “On backtracking failure in
NewtonGmres with a demonstration for the NavierStokes equations”,
Sumitted to J. Comp. Physics
Salinger,
A.G., Lehocuq, R.B., Pawlowski, R.P., and Shadid, J.N.,
“Computational bifurcation and Stability Studies of the 8:1 Thermal
Cavity Problem”, Acepted for publication in Int. J. Num. Meth.
Fluids,
Dec. 2001
G.C. Itle,
A.G. Salinger, R.P. Pawlowski, J.N. Shadid, and L.T. Biegler,
"A Tailored Optimization Strategy for PDEBased Design: Application
to a
CVD Reactor", in preparation.
Means,
S.A., Rintoul, M.D., and Shadid, J.N., “Applications of transport
/ reaction codes to problems in cell modelng”, Sandia Technical
Report,
SAND20013780, Nov. 2001
Barth,
T., Bochev, P. Gunzburger, M. and Shadid, J.,
"A Taxonomy of Stabilized FEM for the Stokes Problem: Preliminary
Studies on
Stability, Accuracy and Convergence", Proceedings of Copper Mountain
Conference
on Iterative Methods, Copper Mounatin, CO., March 24  30, 2002