GENERAL NOTE: Some of the
below files are *.tar.gz. For some reason these files are
sometimes altered when using Internet Explorer, e.g.
trouble try renaming the file *.tar or *.tar.gz or try a different
NMTRI: Non-Manifold Surface Reconstruction
I have implemented a
triangulating non-manifold point clouds in high dimensional vector
spaces, as described in detail in "Non-Manifold Surface
from High Dimensional Point Cloud Data" in publications
The toolbox can
handle 2-manifolds, 2-manifolds with boundary, and 2-manifolds
self-intersections (double curves, no cusps). The code is
in Matlab. Also included is code used in the cyclo-octane
"Topology of Cyclo-Octane Energy Landscape" in publications
Please let me know if you have any problems. (source
OpenOrd: Large-scale Graph Layout (formerly DrL)
We have developed a
force-directed graph layout toolbox focused on real-world
graphs. This toolbox
of graphs using
algorithm based on the popular VxOrd routine (used in the
Parallel version of
for obtaining better
layouts of very large graphs.
Ability to add new
a previously drawn
OpenOrd has been used on
to 849k vertices. It is written in C++ and can be used
Linux, Windows, and Mac, but has mostly been used in
Please email me with
have developed a method for predicting
interactions (see "Predicting Protein-Protein Interactions using
Signature Products" in publications
using amino acid sequences based on J.-L.
's signature descriptor.
The software is written in
C/C++ and is based on T. Joachim's SVM-light package V5.0.
The software has been compiled using gcc/g++ under Linux and Cygwin
. Please let
me know if you have any
problems compiling and/or using the software. (source
IMPORTANT NOTE: You must use SVM-light version 5, otherwise the
won't work. SVM-light version 5 is available from T.
if you scroll
to the bottom.
Last Updated May 24, 2012.